PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 122aa    MW: 13681.3 Da    PI: 9.3762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-052345123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C +C++ F ++  L+ H++ H
  CA09g01560 23 FSCLYCSRKFCTSQALEGHQNAH 45
                89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-52150No hitNo description
PROSITE profilePS5015711.3022350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVDPSMIPIP KAKPKVLSSF RMFSCLYCSR KFCTSQALEG HQNAHKRERA ASRRNMLSTT  60
STTTDSSDHM IRLHFLQNNH NNDMDPSSNI NSFSSSSSSH GGFYTSPPPP NLEQHIFMNF  120
Q*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-49HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554833.11e-60PREDICTED: zinc finger protein KNUCKLES-like
SwissprotQ9FFX46e-16KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLM1BSW63e-31M1BSW6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000521708e-31(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-15C2H2 family protein